62 lines
2.1 KiB
Bash
62 lines
2.1 KiB
Bash
#!/usr/bin/env bash
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# =============================================================================
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# scripts/setup-genomes.sh
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# Iterates through the GENOMES registry to provision remote and local repos.
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# Handles git-crypt initialization and submodule linking.
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# =============================================================================
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set -euo pipefail
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source "lib/output.sh"
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source "config.env"
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source "lib/scaffold.sh"
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source "lib/git-crypt.sh"
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source "providers/${PROVIDER}.sh"
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step "Processing Genome Registry"
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for entry in "${GENOMES[@]}"; do
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# Parse name and description from the array
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IFS='|' read -r GENOME_NAME GENOME_DESC <<< "$entry"
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export GENOME_NAME GENOME_DESC
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info "Processing: ${GENOME_NAME}..."
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# 1. Remote Provisioning (Idempotent: skips if exists)
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provider_create_repo "${GENOME_NAME}" "${GENOME_DESC}" "true"
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GENOME_PATH="${WORK_DIR}/${MASTER_REPO}/${GENOME_NAME}"
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if [ ! -d "${GENOME_PATH}" ]; then
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info "Creating local directory and initializing scaffold..."
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mkdir -p "${GENOME_PATH}"
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cd "${GENOME_PATH}"
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git init
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# IMPORTANT: Initialize git-crypt BEFORE creating sensitive files
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gcrypt_init
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# Create directory structure and apply templates
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scaffold_genome "."
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install_precommit_hook "."
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# Initial commit and push to remote
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git add .
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git commit -m "feat: initial scaffold for ${GENOME_NAME}"
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SSH_URL=$(provider_ssh_url "${GENOME_NAME}")
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git remote add origin "${SSH_URL}"
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git push -u origin main
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# Export the AES key for the user to back up
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gcrypt_export_key "${GENOME_NAME}"
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# 2. Link as submodule in the Master repository
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cd "${WORK_DIR}/${MASTER_REPO}"
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info "Linking ${GENOME_NAME} as a submodule..."
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git submodule add "${SSH_URL}" "${GENOME_NAME}"
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git add .gitmodules "${GENOME_NAME}"
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git commit -m "feat: link submodule ${GENOME_NAME}"
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else
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warn "Genome directory '${GENOME_NAME}' already exists. Skipping local setup."
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fi
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done
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