68 lines
2.1 KiB
Bash
68 lines
2.1 KiB
Bash
#!/usr/bin/env bash
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# =============================================================================
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# scripts/setup-genomes.sh
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# Iterates through the GENOMES registry to provision remote and local repos.
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# =============================================================================
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set -euo pipefail
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source "lib/output.sh"
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source "globals.env"
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if [[ -z "${WORK_DIR:-}" ]]; then
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source "registry.sh"
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fi
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source "lib/scaffold.sh"
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source "lib/git-crypt.sh"
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source "providers/${PROVIDER}.sh"
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step "Processing Genome Registry"
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for entry in "${GENOMES[@]}"; do
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# 4-field format: name|description|linked_repo|cross_source linked_repo optional (may be empty); cross_source defaults to "no".
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IFS='|' read -r GENOME_NAME GENOME_DESC GENOME_LINKED GENOME_CROSS_SOURCE <<< "$entry"
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GENOME_CROSS_SOURCE="${GENOME_CROSS_SOURCE:-no}"
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export GENOME_NAME GENOME_DESC GENOME_LINKED GENOME_CROSS_SOURCE
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info "Processing: ${GENOME_NAME} (cross_source: ${GENOME_CROSS_SOURCE})..."
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# 1. Remote Creation (Idempotent)
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provider_create_repo "${GENOME_NAME}" "${GENOME_DESC}" "true"
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SSH_URL=$(provider_ssh_url "${GENOME_NAME}")
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GENOME_PATH="${WORK_DIR}/${MASTER_REPO}/${GENOME_NAME}"
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if [[ ! -d "${GENOME_PATH}" ]]; then
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cd "${WORK_DIR}/${MASTER_REPO}"
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info "Linking ${GENOME_NAME} as a submodule..."
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git submodule add "${SSH_URL}" "${GENOME_NAME}"
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cd "${GENOME_NAME}"
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# IMPORTANT: Initialize git-crypt BEFORE creating any files
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gcrypt_init
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scaffold_genome "."
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install_precommit_hook "."
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# Initial genome push
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git add .
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git commit -m "feat: initial scaffold and git-crypt init for ${GENOME_NAME}"
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git branch -M main
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git push -u origin main
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# Key export and instructions
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gcrypt_export_key "${GENOME_NAME}"
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gcrypt_print_key_instructions "${GENOME_NAME}"
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# Commit the submodule reference in the master repo
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cd "${WORK_DIR}/${MASTER_REPO}"
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git commit -m "feat: add ${GENOME_NAME} as submodule"
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git push origin main
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fi
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done
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success "Genome provisioning completed."
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