knowledge-genome-orchestrator/scripts/lint-genomes.sh

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#!/usr/bin/env bash
# =============================================================================
# scripts/lint-genomes.sh
# Executes quality control across all registered genomes.
# Iterates from the GENOMES registry in registry.sh — not from filesystem patterns —
# so all genomes are covered regardless of their naming convention.
# =============================================================================
set -euo pipefail
source "lib/output.sh"
source "globals.env"
source "registry.sh"
source "lib/lint.sh"
step "Starting Knowledge Genome Linting"
TOTAL_ERRORS=0
TOTAL_STALE=0
for entry in "${GENOMES[@]}"; do
IFS='|' read -r GENOME_NAME _ <<< "$entry"
genome_dir="${WORK_DIR}/${MASTER_REPO}/${GENOME_NAME}"
if [[ ! -d "$genome_dir" ]]; then
warn "Genome directory not found locally, skipping: ${genome_dir}"
continue
fi
info "Auditing genome: ${GENOME_NAME}..."
# Lint all .md files except AGENTS.md and core-karpathy reference
while IFS= read -r md_file; do
lint_markdown_file "$md_file" "$GENOME_NAME" && fe=0 || fe=$?
check_privacy_consistency "$md_file" && pce=0 || pce=$?
check_page_size "$md_file" && pse=0 || pse=$?
TOTAL_ERRORS=$((TOTAL_ERRORS + fe + pce + pse))
check_knowledge_decay "$md_file" && stale=0 || stale=$?
TOTAL_STALE=$((TOTAL_STALE + stale))
check_broken_links "$md_file" || true # warnings only, never contributes to errors
done < <(find "$genome_dir" -name "*.md" \
! -name "AGENTS.md" \
! -path "*/core-karpathy/*")
done
echo ""
if [[ $TOTAL_ERRORS -eq 0 && $TOTAL_STALE -eq 0 ]]; then
success "Linting passed: all files are consistent, secure, and current."
elif [[ $TOTAL_ERRORS -eq 0 && $TOTAL_STALE -gt 0 ]]; then
warn "Linting passed with ${TOTAL_STALE} stale file(s). Review and re-validate flagged pages."
else
error "Linting failed: ${TOTAL_ERRORS} critical issue(s), ${TOTAL_STALE} stale file(s)."
exit 1
fi