#!/usr/bin/env bash
# =============================================================================
# scripts/add-genome.sh
# Helper to add a single new genome to the existing infrastructure.
# =============================================================================

set -euo pipefail
source "lib/output.sh"
source "config.env"

GENOME_NAME="${1:-}"
GENOME_DESC="${2:-}"

if [[ -z "$GENOME_NAME" || -z "$GENOME_DESC" ]]; then
    error "Missing arguments."
    echo "Usage: $0 <genome-name> <description>"
    exit 1
fi

step "Adding New Genome: ${GENOME_NAME}"

# Sovrascrivo l'array per la sessione corrente
GENOMES=("${GENOME_NAME}|${GENOME_DESC}")

# FIX BUG 2: Uso source invece di bash per mantenere il context dell'array
source "scripts/setup-genomes.sh"

success "Genome '${GENOME_NAME}' added and linked successfully!"