--- title: "Index — {{GENOME_NAME}}" type: index domain: {{ GENOME_NAME }} maturity: stable last_updated: {{ DATE }} private: false --- # Master Index: {{GENOME_NAME}} **[AGENT INSTRUCTION]** This is the primary navigation file. Read it first on every session before accessing individual pages. Append new entries at the bottom of the relevant section — do not reorder or rewrite sections. Alphabetical sorting is handled by the post-processor (index-append.py); the pre-commit hook only enforces the security policy. Update `last_updated` in the YAML frontmatter on every edit. Entry format: `- [[folder/slug]] — One-line summary. \`maturity: <value>\`` --- ## Sources (`wiki/sources/`) _Ingested raw materials. One entry per processed source._ ## Entities (`wiki/entities/`) _People, organisations, tools, projects._ ## Concepts (`wiki/concepts/`) _Theories, methodologies, patterns, architectural decisions._ ## Queries (`wiki/queries/`) _Synthesised answers worth preserving. Archived explorations and analyses._ ## Conflicts Pending Review (`wiki/queries/conflict-*.md`) _Created automatically when the agent detects contradictions between sources._ _Do not summarise entries here — list slugs only to avoid surfacing unresolved claims._ _Remove entry once the operator has resolved and closed the corresponding PR._ ## Private Synthesis (`wiki/private/`) _Restricted access. Requires `PRIVATE_CONTEXT: enabled` and unlocked repo._ _List slug names ONLY. Do not append summaries — prevents metadata leakage._