Merge branch 'release/1.1.3' into main

.editorconfig

@@ -0,0 +1,29 @@
+root = true
+
+# Whitespace / EOL / indent per TUTTI i tipi — cross-editor, zero dipendenze.
+# Non tocca mai il CONTENUTO (quindi i placeholder {{...}} sono al sicuro qui).
+
+[*]
+charset = utf-8
+end_of_line = lf
+insert_final_newline = true
+trim_trailing_whitespace = true
+
+# Markdown: preserva i "due spazi" di fine riga (hard break) → non trimmare.
+[*.md]
+trim_trailing_whitespace = false
+
+[*.{sh,bash}]
+indent_style = space
+indent_size = 2
+
+[*.{py,pyi}]
+indent_style = space
+indent_size = 4
+
+[*.{yml,yaml,json}]
+indent_style = space
+indent_size = 2
+
+[Makefile]
+indent_style = tab

.gitignore

@@ -0,0 +1,4 @@
+# VS Code — only shared workspace settings
+.vscode/*
+!.vscode/settings.json
+!.vscode/extensions.json

.prettierignore

@@ -0,0 +1,8 @@
+# Template engine — contengono i placeholder {{...}}: NON formattare mai.
+templates/
+
+# Contenuto di proprietà dell'agente / generato (di norma in repo separati,
+# elencato qui per sicurezza se apri un genoma nello stesso workspace).
+wiki/
+genomes/
+raw/

.prettierrc

@@ -0,0 +1,5 @@
+{
+  "printWidth": 100,
+  "tabWidth": 2,
+  "proseWrap": "preserve"
+}

.vscode/extensions.json

@@ -0,0 +1,8 @@
+{
+  "recommendations": [
+    "esbenp.prettier-vscode",
+    "editorconfig.editorconfig",
+    "timonwong.shellcheck"
+  ],
+  "unwantedRecommendations": ["dbaeumer.vscode-eslint", "ms-vscode.vscode-typescript-next"]
+}

.vscode/settings.json

@@ -0,0 +1,18 @@
+{
+  "editor.formatOnSave": true,
+  "prettier.requireConfig": true,
+
+  "files.associations": {
+    "templates/**/*.md": "plaintext"
+  },
+
+  "[markdown]": {
+    "editor.defaultFormatter": "esbenp.prettier-vscode"
+  },
+  "[json]": {
+    "editor.defaultFormatter": "esbenp.prettier-vscode"
+  },
+  "[jsonc]": {
+    "editor.defaultFormatter": "esbenp.prettier-vscode"
+  }
+}

Makefile

@@ -1,5 +1,5 @@
 # =============================================================================
-# Knowledge Genome - Makefile v. 1.1.2
+# Knowledge Genome - Makefile v. 1.1.3
 # Orchestrates the setup and management of the knowledge base.
 # =============================================================================
 

lib/scaffold.sh

@@ -16,6 +16,12 @@ render_template() {
   local content
   content=$(<"$template_file")
 
+  # HARDENING: collapse any “spaced” placeholders from a formatter
+  #   { { KEY } }  ->  {{KEY}}   (KEY = UPPERCASE/underscore)
+  # Defense in depth: if Prettier or a copy-paste breaks the syntax again,
+  # the scaffold fixes itself. sed is a core utility (like tr/date already used here).
+  content=$(sed -E 's/\{[[:space:]]*\{[[:space:]]*([A-Z_]+)[[:space:]]*\}[[:space:]]*\}/{{\1}}/g' <<<"$content")
+
   # Defaults (:-) so master-repo templates render even when GENOME_* are unset
   # (scaffold_master runs before any genome; set -u would otherwise abort here).
   local genome_name_upper