Makefile

@@ -1,5 +1,5 @@
 # =============================================================================
-# Knowledge Genome - Makefile v. 1.12.0
+# Knowledge Genome - Makefile v. 1.11.1
 # Orchestrates the setup and management of the knowledge base.
 # =============================================================================
 

deploy/nexus/genome-raw-commit.sh

@@ -28,8 +28,7 @@ set -a; . "${HOME}/.config/knowledge-genome.env"; set +a
 vault="${GENOME_VAULTS_ROOT}/${genome}"
 fid="${genome}-public"
 authors_map="${GENOME_VAULTS_ROOT}/.authors.json"
-# GENOME_PUSH_URL is a test seam: defaults to the Forgejo loopback URL in production.
+clone_url="http://${FORGEJO_USER}@${FORGEJO_HOST}/${FORGEJO_OWNER}/${genome}.git"
-clone_url="${GENOME_PUSH_URL:-http://${FORGEJO_USER}@${FORGEJO_HOST}/${FORGEJO_OWNER}/${genome}.git}"
 export GIT_ASKPASS=/usr/local/bin/genome-askpass
 
 [[ -d "${vault}/.git" ]] || { printf '{"status":"error","reason":"vault absent","genome":"%s"}\n' "$genome"; exit 1; }
@@ -43,30 +42,8 @@ grep -qxF 'raw/.stfolder' "${vault}/.git/info/exclude" 2>/dev/null || echo 'raw/
 
 git add -A -- raw/
 git reset -q -- raw/.stignore raw/.stfolder 2>/dev/null || true
-
-# --- Quiet window: only commit raw files that have STOPPED changing. ----------------
-# While a note is being written (Obsidian autosave -> Syncthing -> here) its mtime stays
-# fresh; we leave it UNSTAGED so a half-written note never triggers an ingest. A file is
-# committed only after it has been still for RAW_QUIET_MINUTES. Deletions (nothing on disk)
-# are stable by definition and pass straight through. Deterministic — no model in the loop.
-quiet_min="${RAW_QUIET_MINUTES:-2}"
-held=0
-while IFS= read -r f; do
-  [[ -z "$f" ]] && continue
-  # Only an existing file can be "hot"; a staged deletion has nothing on disk to settle.
-  if [[ -e "$f" && -n "$(find "$f" -mmin -"$quiet_min" 2>/dev/null)" ]]; then
-    git reset -q -- "$f" 2>/dev/null || true
-    held=$((held+1))
-  fi
-done < <(git diff --cached --name-only -- raw/)
-
 if git diff --cached --quiet; then
-  if [[ "$held" -gt 0 ]]; then
+  printf '{"status":"noop","genome":"%s"}\n' "$genome"
-    printf '{"status":"noop","reason":"raw still settling","genome":"%s","held":%d,"quiet_minutes":%d}\n' \
-      "$genome" "$held" "$quiet_min"
-  else
-    printf '{"status":"noop","genome":"%s"}\n' "$genome"
-  fi
   exit 0
 fi
 

tests/open-pr-rolling.bats

@@ -1,48 +0,0 @@
-#!/usr/bin/env bats
-# open-pr-rolling.bats — a re-ingest of the same slug updates the OPEN PR's branch
-# (force-with-lease) instead of failing. Uses the local bare remote from make_fixture_genome.
-load helpers
-setup_file() { :; }
-
-@test "open-pr: re-ingest of the same slug rolls the branch forward (force-with-lease)" {
-  command -v jq >/dev/null 2>&1 || skip "jq not installed"
-  G="$(make_fixture_genome)"; cd "$G"
-  export FORGEJO_URL="http://forgejo.local" FORGEJO_USER=u FORGEJO_TOKEN=t DRY_RUN=1
-  body="$(mktemp)"; echo body > "$body"
-
-  # first ingest of slug x (v1)
-  mkdir -p wiki/sources; printf 'v1\n' > wiki/sources/x.md
-  run bash "$SKILL_SCRIPTS/open-pr.sh" --slug x --title "feat: ingest x" --body-file "$body" --base main
-  [ "$status" -eq 0 ]
-  git rev-parse --verify feat/ai-ingest-x
-  first="$(git rev-parse feat/ai-ingest-x)"
-
-  # simulate clean_start back to base, then an edited re-ingest (v2)
-  git switch -q main; git reset -q --hard origin/main; git clean -q -fd
-  printf 'v2-edited\n' > wiki/sources/x.md
-  run bash "$SKILL_SCRIPTS/open-pr.sh" --slug x --title "feat: ingest x" --body-file "$body" --base main
-  [ "$status" -eq 0 ]
-  second="$(git rev-parse feat/ai-ingest-x)"
-
-  # the branch was REBUILT from base (diverged), not appended: second is not a descendant of first
-  run git merge-base --is-ancestor "$first" "$second"
-  [ "$status" -ne 0 ]
-
-  # origin received the v2 content (force-with-lease pushed the rebuilt branch)
-  git fetch -q origin
-  run git show "origin/feat/ai-ingest-x:wiki/sources/x.md"
-  [ "$status" -eq 0 ]
-  [[ "$output" == *"v2-edited"* ]]
-}
-
-@test "open-pr: prune branch override still works after the rolling change" {
-  command -v jq >/dev/null 2>&1 || skip "jq not installed"
-  G="$(make_fixture_genome)"; cd "$G"
-  export FORGEJO_URL="http://forgejo.local" FORGEJO_USER=u FORGEJO_TOKEN=t DRY_RUN=1
-  body="$(mktemp)"; echo body > "$body"
-  mkdir -p wiki/sources; printf 'p\n' > wiki/sources/p.md
-  run bash "$SKILL_SCRIPTS/open-pr.sh" --branch "chore/prune-orphans-2026-06-30" \
-      --title "chore: prune 1 orphaned source(s)" --body-file "$body" --base main
-  [ "$status" -eq 0 ]
-  git rev-parse --verify "chore/prune-orphans-2026-06-30"
-}

tests/raw-commit-quiet.bats

@@ -1,75 +0,0 @@
-#!/usr/bin/env bats
-# raw-commit-quiet.bats — quiet-window behaviour of genome-raw-commit.sh.
-# No Syncthing (no API key -> default author); pushes to a local bare repo via GENOME_PUSH_URL.
-setup() {
-  SCRIPT="${BATS_TEST_DIRNAME}/../deploy/nexus/genome-raw-commit.sh"
-  export HOME="${BATS_TEST_TMPDIR}/home"; mkdir -p "$HOME/.config"
-  root="${BATS_TEST_TMPDIR}/vaults"; mkdir -p "$root"
-  bare="${BATS_TEST_TMPDIR}/origin.git"; git init -q --bare "$bare"
-  cat > "$HOME/.config/knowledge-genome.env" <<EOF
-GENOME_VAULTS_ROOT=$root
-GENOME_BASE=main
-FORGEJO_USER=n8n-bot
-FORGEJO_HOST=127.0.0.1:3001
-FORGEJO_OWNER=Keru
-COMMITTER_NAME=n8n-bot
-COMMITTER_EMAIL=n8n-bot@homelab
-DEFAULT_AUTHOR_NAME=Tester
-DEFAULT_AUTHOR_EMAIL=tester@local
-EOF
-  export g="genome-test"; export vault="$root/$g"
-  git clone -q "$bare" "$vault" 2>/dev/null || mkdir -p "$vault"
-  ( cd "$vault"
-    git init -q 2>/dev/null || true
-    git config user.name n8n-bot; git config user.email n8n-bot@homelab; git config commit.gpgsign false
-    git checkout -q -b main 2>/dev/null || git switch -q main
-    mkdir -p raw/articles; echo seed > raw/articles/.gitkeep
-    git add -A; git commit -q -m init
-    git remote add origin "$bare" 2>/dev/null || git remote set-url origin "$bare"
-    git push -q -u origin main )
-  export GENOME_PUSH_URL="$bare"      # test seam -> push to the local bare repo
-}
-files() { ( cd "$vault" && git ls-files raw/ ) > "${BATS_TEST_TMPDIR}/f.txt"; }
-
-@test "raw-commit: holds a freshly-written raw, commits it once it settles" {
-  command -v jq >/dev/null 2>&1 || skip "jq not installed"
-  echo "still typing" > "$vault/raw/articles/hot.md"                       # fresh -> hot
-  echo "finished"     > "$vault/raw/articles/stable.md"
-  touch -d "10 minutes ago" "$vault/raw/articles/stable.md"                # settled
-
-  run bash "$SCRIPT" "$g"
-  [ "$status" -eq 0 ]
-  echo "$output" | jq -e '.status=="ok"'
-  files
-  grep -q 'raw/articles/stable.md' "${BATS_TEST_TMPDIR}/f.txt"             # committed
-  ! grep -q 'raw/articles/hot.md'  "${BATS_TEST_TMPDIR}/f.txt"            # held back
-
-  touch -d "10 minutes ago" "$vault/raw/articles/hot.md"                   # now it settles
-  run bash "$SCRIPT" "$g"
-  [ "$status" -eq 0 ]
-  files
-  grep -q 'raw/articles/hot.md' "${BATS_TEST_TMPDIR}/f.txt"               # now committed
-}
-
-@test "raw-commit: noop with held count while everything is still settling" {
-  command -v jq >/dev/null 2>&1 || skip "jq not installed"
-  echo "typing" > "$vault/raw/articles/wip.md"                            # fresh -> hot
-  run bash "$SCRIPT" "$g"
-  [ "$status" -eq 0 ]
-  echo "$output" | jq -e '.status=="noop"'
-  echo "$output" | jq -e '.held==1'
-}
-
-@test "raw-commit: a deletion is committed immediately (not subject to the quiet window)" {
-  command -v jq >/dev/null 2>&1 || skip "jq not installed"
-  # commit a settled file first
-  echo done > "$vault/raw/articles/old.md"; touch -d "10 minutes ago" "$vault/raw/articles/old.md"
-  run bash "$SCRIPT" "$g"; [ "$status" -eq 0 ]
-  files; grep -q 'raw/articles/old.md' "${BATS_TEST_TMPDIR}/f.txt"
-  # now delete it -> should commit the removal even though "just changed"
-  rm "$vault/raw/articles/old.md"
-  run bash "$SCRIPT" "$g"
-  [ "$status" -eq 0 ]
-  echo "$output" | jq -e '.status=="ok"'
-  files; ! grep -q 'raw/articles/old.md' "${BATS_TEST_TMPDIR}/f.txt"
-}