feat: Automatically register new genomes as submodules

scripts/setup-genomes.sh

@@ -40,6 +40,8 @@ for entry in "${GENOMES[@]}"; do
 
         cd "${GENOME_NAME}"
 
+        git switch -C main
+
         # IMPORTANT: Initialize git-crypt BEFORE creating any files
         gcrypt_init
 
@@ -50,10 +52,13 @@ for entry in "${GENOMES[@]}"; do
         git add .
         git commit -m "feat: initial scaffold and git-crypt init for ${GENOME_NAME}"
 
-        git branch -M main
-
         git push -u origin main
 
+        cd "${WORK_DIR}/${MASTER_REPO}"
+        git add .gitmodules "${GENOME_NAME}"
+        git commit -m "chore: register submodule ${GENOME_NAME}"
+        git push
+
         # Key export and instructions
         gcrypt_export_key "${GENOME_NAME}"
         gcrypt_print_key_instructions "${GENOME_NAME}"