From c0aff1ff098b21d48eda075bea540d219586db0c Mon Sep 17 00:00:00 2001
From: Matteo Cherubini <cherubinimatte@gmail.com>
Date: Tue, 9 Jun 2026 14:56:13 +0200
Subject: [PATCH] chore: standardize initial branch name to 'main' in setup
 scripts

---
 scripts/setup-genomes.sh | 3 +++
 scripts/setup-master.sh  | 2 ++
 2 files changed, 5 insertions(+)

diff --git a/scripts/setup-genomes.sh b/scripts/setup-genomes.sh
index c6c7975..b30af18 100644
--- a/scripts/setup-genomes.sh
+++ b/scripts/setup-genomes.sh
@@ -48,6 +48,9 @@ for entry in "${GENOMES[@]}"; do
         # Initial genome push
         git add .
         git commit -m "feat: initial scaffold and git-crypt init for ${GENOME_NAME}"
+
+        git branch -M main
+
         git push -u origin main
 
         # Key export and instructions
diff --git a/scripts/setup-master.sh b/scripts/setup-master.sh
index 181c01e..66fe82a 100644
--- a/scripts/setup-master.sh
+++ b/scripts/setup-master.sh
@@ -37,5 +37,7 @@ scaffold_master "."
 git add .
 git commit -m "chore: initialize master scaffold" || info "No changes to commit in master."
 
+git branch -M main
+
 # 3. Initial Push
 git push -u origin main