refactor: Rename 'knowledge-genome-setup' to 'knowledge-genome-orchestrator'

lib/git-crypt.sh

@@ -55,7 +55,7 @@ gcrypt_verify() {
 #
 # USAGE:
 #   source lib/git-crypt.sh
-#   cd ~/knowledge-genome-setup/genome-dev
+#   cd ~/knowledge-genome-orchestrator/genome-dev
 #   gcrypt_rotate_key "genome-dev"
 #
 # REQUIRES:

registry.sh

@@ -12,7 +12,7 @@ _REGISTRY_LOADED=1
 PROJECT_ROOT="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)"
 
 # Dynamic paths
-WORK_DIR="${HOME}/knowledge-genome-setup"
+WORK_DIR="${HOME}/knowledge-genome-orchestrator"
 KEYS_DIR="${WORK_DIR}/keys"
 TEMPLATES_DIR="${PROJECT_ROOT}/templates"
 LIB_DIR="${PROJECT_ROOT}/lib"

skills/ingest/scripts/scoped-lint.sh

@@ -4,7 +4,7 @@
 # Run the framework's validation on ONLY the files touched this session.
 # Reuses lib/lint.sh + lib/output.sh — same checks as `make lint`, scoped.
 #
-#   KG_LIB_DIR=/opt/knowledge-genome-setup/lib \
+#   KG_LIB_DIR=/opt/knowledge-genome-orchestrator/lib \
 #     scoped-lint.sh <genome_name> wiki/sources/x.md wiki/entities/y.md
 #
 # Exits non-zero if any hard error is found, so the agent notices.