From 813924460dcbcd34ab4b3b3906829af939c6de64 Mon Sep 17 00:00:00 2001
From: Matteo Cherubini <cherubinimatte@gmail.com>
Date: Fri, 12 Jun 2026 12:16:17 +0200
Subject: [PATCH] feat: Improve pre-commit hook installation robustness

---
 lib/scaffold.sh | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/lib/scaffold.sh b/lib/scaffold.sh
index 8c1e3a7..330d53a 100644
--- a/lib/scaffold.sh
+++ b/lib/scaffold.sh
@@ -64,8 +64,11 @@ scaffold_genome() {
 
 install_precommit_hook() {
   local repo_path="$1"
-  local hook_path="${repo_path}/.git/hooks/pre-commit"
+  local hooks_dir
+  hooks_dir="$(git -C "$repo_path" rev-parse --git-path hooks)"
+  local hook_path="${hooks_dir}/pre-commit"
 
+  mkdir -p "$hooks_dir"
   cp "${TEMPLATES_DIR}/pre-commit.sh" "$hook_path"
   chmod +x "$hook_path"
   success "Pre-commit security hook installed at: $hook_path"